Science_Chemistry
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Packages:
Science_Chemistry
Classes:
Science_Chemistry_Atom
Science_Chemistry_Atom_PDB
Science_Chemistry_Coordinates
Science_Chemistry_Element
Science_Chemistry_Macromolecule
Science_Chemistry_Macromolecule_PDB
Science_Chemistry_Molecule
Science_Chemistry_Molecule_XYZ
Science_Chemistry_PDBFile
Science_Chemistry_PDBParser
Science_Chemistry_Periodic_Table
Science_Chemistry_Residue_PDB
Files:
Atom.php
Atom_PDB.php
Chemistry.php
Coordinates.php
Element.php
Macromolecule.php
Macromolecule_PDB.php
Molecule.php
Molecule_XYZ.php
PDBFile.php
PDBParser.php
Periodic_Table.php
Residue_PDB.php
Class: Science_Chemistry_PDBFile
Source Location: /Science_Chemistry-1.1.2/Science/Chemistry/PDBFile.php
Class Overview
Represents a PDB file, composed of one or more Science_Chemistry_Macromolecule_PDB objects
Author(s):
Jesus M. Castagnetto <
jmcastagnetto at php.net
>
Version:
1.0
Methods
Science_Chemistry_PDBFile
toCML
Inherited Variables
Inherited Methods
Class Details
[line
33
]
Represents a PDB file, composed of one or more Science_Chemistry_Macromolecule_PDB objects
Author:
Jesus M. Castagnetto <
jmcastagnetto@php.net
>
Version:
1.0
See:
Science_Chemistry_PDBParser
Access:
public
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Method Detail
Science_Chemistry_PDBFile (Constructor)
[line
101
]
object PDBFile; Science_Chemistry_PDBFile( string $filename, [ $usemeta = false])
Constructor for the class, requires a PDB filename
See:
mkArrays()
See:
$file
See:
$pdb
Access:
public
Parameters:
string
$filename
—
$usemeta
—
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toCML
[line
189
]
string toCML( )
Returns a CML representation of the PDB file TODO
Access:
public
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