Class: Science_Chemistry_Atom_PDB

Source Location: /Science_Chemistry-1.1.2/Science/Chemistry/Atom_PDB.php

Science_Chemistry_Atom
   |
   --Science_Chemistry_Atom_PDB

Represents a PDB atom record and contains a reference to the PDB residue to which it belongs

Science_Chemistry_Atom::Science_Chemistry_Atom(): Constructor for the class, requires the element symbol and an optional array of coordinates
Science_Chemistry_Atom::distance(): Calculates the cartesian distance from this atom instance to another
Science_Chemistry_Atom::getCoordinates(): Returns the coordinates object for the atom
Science_Chemistry_Atom::getElement(): Returns the chemical symbol for the atom
Science_Chemistry_Atom::isAtom(): Checks if the object is an instance of Science_Chemistry_Atom
Science_Chemistry_Atom::setCoordinates(): Sets the coordinates for the atom object
Science_Chemistry_Atom::toCML(): Returns a CML representation of the Science_Chemistry_Atom object Accepts an optional id
Science_Chemistry_Atom::toString(): Returns a string representation of the Science_Chemistry_Atom object Alias of toXYZ()
Science_Chemistry_Atom::toXYZ(): Returns a XYZ representation of the Science_Chemistry_Atom object

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Represents a PDB atom record and contains a reference to the PDB residue to which it belongs

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Reference to the containing Residue object

Type:

object Residue_PDB

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If the atom object has been initialized

Type:

boolean

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Science_Chemistry_Atom_PDB Science_Chemistry_Atom_PDB(

&$atomrec, [
&$residue = ""])

	`&$atomrec`	—
	`&$residue`	—

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void getField(

$field)

$field —

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