Description: ------------ When calling generateContents() on a directory structure which has one similar to Package: API_1 Files: API/1/Disptacher.php API/1/0/Arg.php API/1/0/Endpoint.php With this structure the 'Dispatcher.php' file will never be listed in the package.xml. I think it has something to do with the directory itself being an integer. This applies to both the Svn and File generators.

The problem is visible in PEAR_PackageFileManager2::generateContents(), and in PEAR_PackageFileManager_File::getFileList() - but not in PEAR_PackageFileManager_File::dirList().

Internally, files are indexed with numbers 0, 1, 2 and so on - directories have their real name in that array. So using a directory with name "0" or "1" will overwrite the file with the same *index*. This is an inherent problem in the way the file arrays are organized internally. One solution would be to prefix directories with a dash or hash sign. But that will probably have influence on the whole filemanager package code...

I'll take a look at this and see how feasible a fix is given how we construct the internal assoc array. I've created a test case for this.