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Bug #18040 Pyrus: pickle generated PECL packages fail at build/install time
Submitted: 2010-11-10 19:28 UTC
From: treffynnon Assigned: cweiske
Status: Closed Package: PEAR (version SVN)
PHP Version: 5.3.3 OS: Linux: Ubuntu 10.10 Maverick
Roadmaps: (Not assigned)    
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 [2010-11-10 19:28 UTC] treffynnon (Simon Holywell)
Description: ------------ Pyrus version 2.0.0a1 SHA-1: E8D2B52B1C5FB9C1F02D753BECEAB96176348F77 When creating a package from the ssdeep PECL extension I attempted to run `php pyrus.phar pickle`, which completed successfully and produced a .tgz package as expected. Subsequently I ran `pecl install ssdeep-1.0.2.tgz` to test building and installing the extension from the package. This feedback "ERROR: file /build/buildd/php5-5.3.3/pear-build-download/ssdeep-1.0.2/examples/example.php does not exist" Upon looking in /build/buildd/php5-5.3.3/pear-build-download/ I could see that there was no ssdeep-1.0.2 directory in there. The build directory looked like: ls -lkha /build/buildd/php5-5.3.3/pear-build-download/ total 44K drwxr-xr-x 5 root root 4.0K Nov 10 12:58 . drwxr-xr-x 3 root root 4.0K Nov 10 10:42 .. drwxr-xr-x 2 root root 4.0K Nov 10 10:46 .phar -rw-r--r-- 1 root root 3.2K Nov 10 12:58 ax_libssdeep.m4 -rw-r--r-- 1 root root 1.2K Nov 10 12:58 config.m4 drwxr-xr-x 2 root root 4.0K Nov 10 12:58 examples -rw-r--r-- 1 root root 3.3K Nov 10 12:58 package.xml -rw-r--r-- 1 root root 1.9K Nov 10 12:58 php_ssdeep.h -rw-r--r-- 1 root root 5.4K Nov 10 12:58 ssdeep.c drwxr-xr-x 2 root root 4.0K Nov 10 12:58 tests So it appears that PECL is extracting the files to the wrong location when a pyrus pickle package is supplied to it. To get my package to create and build correctly I currently run `php pyrus.phar pickle --donotpackage` followed by `php pyrus.phar package`. I have attached two files to this report one generated by each method so you can see the difference. The source for ssdeep is available via PECL SVN. Test script: --------------- # Just in case ssdeep has been installed before we don't want PECL getting confused and attempting to use the wrong ssdeep files rm -rf /build/buildd/php5-5.3.3/pear-build-download/* php pyrus.phar pickle pecl install ssdeep-1.0.2.tgz Expected result: ---------------- 4 source files, building running: phpize Configuring for: PHP Api Version: 20090626 Zend Module Api No: 20090626 Zend Extension Api No: 220090626 building in /var/tmp/pear-build-root/ssdeep-1.0.2 running: /tmp/pear/temp/ssdeep/configure checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a sed that does not truncate output... /bin/sed checking for cc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cc -E checking for icc... no checking for suncc... no checking whether cc understands -c and -o together... yes checking for system library directory... lib checking if compiler supports -R... no checking if compiler supports -Wl,-rpath,... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking for PHP prefix... /usr checking for PHP includes... -I/usr/include/php5 -I/usr/include/php5/main -I/usr/include/php5/TSRM -I/usr/include/php5/Zend -I/usr/include/php5/ext -I/usr/include/php5/ext/date/lib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 checking for PHP extension directory... /usr/lib/php5/20090626+lfs checking for PHP installed headers prefix... /usr/include/php5 checking if debug is enabled... no checking if zts is enabled... no checking for re2c... no configure: WARNING: You will need re2c 0.13.4 or later if you want to regenerate PHP parsers. checking for gawk... gawk checking for ssdeep support... yes, shared checking whether to enable build debug output... no checking for ssdeep... /usr/local/lib checking for fuzzy_compare in -lfuzzy... yes checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no configure: creating ./config.status config.status: creating config.h config.status: executing libtool commands running: make /bin/bash /var/tmp/pear-build-root/ssdeep-1.0.2/libtool --mode=compile cc -I. -I/tmp/pear/temp/ssdeep -DPHP_ATOM_INC -I/var/tmp/pear-build-root/ssdeep-1.0.2/include -I/var/tmp/pear-build-root/ssdeep-1.0.2/main -I/tmp/pear/temp/ssdeep -I/usr/include/php5 -I/usr/include/php5/main -I/usr/include/php5/TSRM -I/usr/include/php5/Zend -I/usr/include/php5/ext -I/usr/include/php5/ext/date/lib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c /tmp/pear/temp/ssdeep/ssdeep.c -o ssdeep.lo libtool: compile: cc -I. -I/tmp/pear/temp/ssdeep -DPHP_ATOM_INC -I/var/tmp/pear-build-root/ssdeep-1.0.2/include -I/var/tmp/pear-build-root/ssdeep-1.0.2/main -I/tmp/pear/temp/ssdeep -I/usr/include/php5 -I/usr/include/php5/main -I/usr/include/php5/TSRM -I/usr/include/php5/Zend -I/usr/include/php5/ext -I/usr/include/php5/ext/date/lib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c /tmp/pear/temp/ssdeep/ssdeep.c -fPIC -DPIC -o .libs/ssdeep.o /bin/bash /var/tmp/pear-build-root/ssdeep-1.0.2/libtool --mode=link cc -DPHP_ATOM_INC -I/var/tmp/pear-build-root/ssdeep-1.0.2/include -I/var/tmp/pear-build-root/ssdeep-1.0.2/main -I/tmp/pear/temp/ssdeep -I/usr/include/php5 -I/usr/include/php5/main -I/usr/include/php5/TSRM -I/usr/include/php5/Zend -I/usr/include/php5/ext -I/usr/include/php5/ext/date/lib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -o ssdeep.la -export-dynamic -avoid-version -prefer-pic -module -rpath /var/tmp/pear-build-root/ssdeep-1.0.2/modules ssdeep.lo -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lfuzzy libtool: link: cc -shared .libs/ssdeep.o -L/usr/local/lib /usr/local/lib/libfuzzy.so -Wl,-rpath -Wl,/usr/local/lib -Wl,-soname -Wl,ssdeep.so -o .libs/ssdeep.so libtool: link: ( cd ".libs" && rm -f "ssdeep.la" && ln -s "../ssdeep.la" "ssdeep.la" ) /bin/bash /var/tmp/pear-build-root/ssdeep-1.0.2/libtool --mode=install cp ./ssdeep.la /var/tmp/pear-build-root/ssdeep-1.0.2/modules libtool: install: cp ./.libs/ssdeep.so /var/tmp/pear-build-root/ssdeep-1.0.2/modules/ssdeep.so libtool: install: cp ./.libs/ssdeep.lai /var/tmp/pear-build-root/ssdeep-1.0.2/modules/ssdeep.la libtool: finish: PATH="/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin:/sbin" ldconfig -n /var/tmp/pear-build-root/ssdeep-1.0.2/modules ---------------------------------------------------------------------- Libraries have been installed in: /var/tmp/pear-build-root/ssdeep-1.0.2/modules If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- Build complete. Don't forget to run 'make test'. running: make INSTALL_ROOT="/var/tmp/pear-build-root/install-ssdeep-1.0.2" install Installing shared extensions: /var/tmp/pear-build-root/install-ssdeep-1.0.2/usr/lib/php5/20090626+lfs/ running: find "/var/tmp/pear-build-root/install-ssdeep-1.0.2" | xargs ls -dils 1318915 4 drwxr-xr-x 3 root root 4096 Nov 10 13:19 /var/tmp/pear-build-root/install-ssdeep-1.0.2 1318939 4 drwxr-xr-x 3 root root 4096 Nov 10 13:19 /var/tmp/pear-build-root/install-ssdeep-1.0.2/usr 1318940 4 drwxr-xr-x 3 root root 4096 Nov 10 13:19 /var/tmp/pear-build-root/install-ssdeep-1.0.2/usr/lib 1318941 4 drwxr-xr-x 3 root root 4096 Nov 10 13:19 /var/tmp/pear-build-root/install-ssdeep-1.0.2/usr/lib/php5 1318942 4 drwxr-xr-x 2 root root 4096 Nov 10 13:19 /var/tmp/pear-build-root/install-ssdeep-1.0.2/usr/lib/php5/20090626+lfs 1318938 32 -rwxr-xr-x 1 root root 29829 Nov 10 13:19 /var/tmp/pear-build-root/install-ssdeep-1.0.2/usr/lib/php5/20090626+lfs/ssdeep.so Build process completed successfully Installing '/usr/lib/php5/20090626+lfs/ssdeep.so' install ok: channel://pecl.php.net/ssdeep-1.0.2 configuration option "php_ini" is not set to php.ini location You should add "extension=ssdeep.so" to php.ini Actual result: -------------- ERROR: file /build/buildd/php5-5.3.3/pear-build-download/ssdeep-1.0.2/examples/example.php does not exist

Comments

 [2010-11-10 19:32 UTC] treffynnon (Simon Holywell)
-Summary: Pyrus pickle generated PECL packages fail at build/install time +Summary: Pyrus: pickle generated PECL packages fail at build/install time
 [2010-11-10 19:55 UTC] treffynnon (Simon Holywell)
The files are hosted by cweiske: 1. http://tmp.cweiske.de/pickle-donotpackage-ssdeep-1.0.2.tgz 2. http://tmp.cweiske.de/pickle-ssdeep-1.0.2.tgz File 1 was generated using the two step method (`php pyrus.phar pickle -- donotpackage` followed by `php pyrus.phar package`) File 2 was generated using straight `php pyrus.phar pickle`
 [2011-06-03 19:45 UTC] cweiske (Christian Weiske)
-Status: Open +Status: Closed -Assigned To: +Assigned To: cweiske
moved to https://github.com/pear2/PEAR2_Pyrus/issues/21